<?xml version='1.0' encoding='UTF-8'?><?xml-stylesheet href="http://www.blogger.com/styles/atom.css" type="text/css"?><feed xmlns='http://www.w3.org/2005/Atom' xmlns:openSearch='http://a9.com/-/spec/opensearchrss/1.0/' xmlns:georss='http://www.georss.org/georss' xmlns:gd='http://schemas.google.com/g/2005' xmlns:thr='http://purl.org/syndication/thread/1.0'><id>tag:blogger.com,1999:blog-1112086065409433705</id><updated>2012-02-16T00:11:43.293-08:00</updated><title type='text'>janakihasin</title><subtitle type='html'></subtitle><link rel='http://schemas.google.com/g/2005#feed' type='application/atom+xml' href='http://janakihasin.blogspot.com/feeds/posts/default'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/1112086065409433705/posts/default?max-results=100'/><link rel='alternate' type='text/html' href='http://janakihasin.blogspot.com/'/><link rel='hub' href='http://pubsubhubbub.appspot.com/'/><author><name>janakihasin</name><uri>http://www.blogger.com/profile/18031418144832292899</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><generator version='7.00' uri='http://www.blogger.com'>Blogger</generator><openSearch:totalResults>1</openSearch:totalResults><openSearch:startIndex>1</openSearch:startIndex><openSearch:itemsPerPage>100</openSearch:itemsPerPage><entry><id>tag:blogger.com,1999:blog-1112086065409433705.post-5312255161117983186</id><published>2007-12-14T08:10:00.000-08:00</published><updated>2007-12-14T08:11:08.940-08:00</updated><title type='text'></title><content type='html'>&lt;h2&gt;&lt;span class="mw-headline"&gt;Molecular production&lt;/span&gt;&lt;/h2&gt; &lt;div class="thumb tleft"&gt; &lt;div class="thumbinner" style="width: 252px;"&gt;&lt;a href="http://en.wikipedia.org/wiki/Image:Thylakoid_membrane.png" class="image" title="Light-dependent reactions of photosynthesis at the thylakoid membrane"&gt;&lt;img alt="Light-dependent reactions of photosynthesis at the thylakoid membrane" src="http://upload.wikimedia.org/wikipedia/en/thumb/1/18/Thylakoid_membrane.png/250px-Thylakoid_membrane.png" class="thumbimage" border="0" height="143" width="250" /&gt;&lt;/a&gt; &lt;div class="thumbcaption"&gt; &lt;div class="magnify" style="float: right;"&gt;&lt;a href="http://en.wikipedia.org/wiki/Image:Thylakoid_membrane.png" class="internal" title="Enlarge"&gt;&lt;img src="http://en.wikipedia.org/skins-1.5/common/images/magnify-clip.png" alt="" height="11" width="15" /&gt;&lt;/a&gt;&lt;/div&gt; Light-dependent reactions of photosynthesis at the thylakoid membrane&lt;/div&gt; &lt;/div&gt; &lt;/div&gt; &lt;p&gt;&lt;a name="Light_to_chemical_energy" id="Light_to_chemical_energy"&gt;&lt;/a&gt;&lt;/p&gt; &lt;h4&gt;&lt;span class="mw-headline"&gt;Light to chemical energy&lt;/span&gt;&lt;/h4&gt; &lt;dl&gt;&lt;dd&gt; &lt;div class="noprint relarticle mainarticle"&gt;&lt;i&gt;Main article: &lt;a href="http://en.wikipedia.org/wiki/Light-dependent_reaction" title="Light-dependent reaction"&gt;Light-dependent reaction&lt;/a&gt;&lt;/i&gt;&lt;/div&gt; &lt;/dd&gt;&lt;/dl&gt; &lt;p&gt;The light energy is converted to chemical energy using the &lt;a href="http://en.wikipedia.org/wiki/Light-dependent_reaction" title="Light-dependent reaction"&gt;light-dependent reactions&lt;/a&gt;. This chemical energy production is more than 90% efficient with only 5-8% of the energy transferred thermally. The products of the &lt;a href="http://en.wikipedia.org/wiki/Light-dependent_reaction" title="Light-dependent reaction"&gt;light-dependent reactions&lt;/a&gt; are &lt;a href="http://en.wikipedia.org/wiki/Adenosine_triphosphate" title="Adenosine triphosphate"&gt;ATP&lt;/a&gt; from &lt;a href="http://en.wikipedia.org/wiki/Photophosphorylation" title="Photophosphorylation"&gt;photophosphorylation&lt;/a&gt; and &lt;a href="http://en.wikipedia.org/wiki/NADPH" title="NADPH"&gt;NADPH&lt;/a&gt; from photoreduction. Both are then utilized as an energy source for the &lt;a href="http://en.wikipedia.org/wiki/Light-independent_reaction" title="Light-independent reaction"&gt;light-independent reactions&lt;/a&gt;.&lt;/p&gt; &lt;p&gt;Not all &lt;a href="http://en.wikipedia.org/wiki/Wavelength" title="Wavelength"&gt;wavelengths&lt;/a&gt; of light can support photosynthesis. The photosynthetic action spectrum depends on the type of &lt;a href="http://en.wikipedia.org/wiki/Accessory_pigment" title="Accessory pigment"&gt;accessory pigments&lt;/a&gt; present. For example, in green plants, the &lt;a href="http://en.wikipedia.org/wiki/Action_spectrum" title="Action spectrum"&gt;action spectrum&lt;/a&gt; resembles the &lt;a href="http://en.wikipedia.org/wiki/Absorption_spectrum" title="Absorption spectrum"&gt;absorption spectrum&lt;/a&gt; for &lt;a href="http://en.wikipedia.org/wiki/Chlorophyll" title="Chlorophyll"&gt;chlorophylls&lt;/a&gt; and &lt;a href="http://en.wikipedia.org/wiki/Carotenoid" title="Carotenoid"&gt;carotenoids&lt;/a&gt; with peaks for violet-blue and red light. In red algae, the action spectrum overlaps with the absorption spectrum of &lt;a href="http://en.wikipedia.org/wiki/Phycobilin" title="Phycobilin"&gt;phycobilins&lt;/a&gt; for blue-green light, which allows these algae to grow in deeper waters that filter out the longer wavelengths used by green plants. The non-absorbed part of the light spectrum is what gives photosynthetic organisms their color (e.g. green plants, red algae, purple bacteria) and is the least effective for photosynthesis in the respective organisms.&lt;/p&gt; &lt;p&gt;&lt;a name="Z_scheme" id="Z_scheme"&gt;&lt;/a&gt;&lt;/p&gt; &lt;h5&gt;&lt;span class="mw-headline"&gt;Z scheme&lt;/span&gt;&lt;/h5&gt; &lt;div class="thumb tright"&gt; &lt;div class="thumbinner" style="width: 252px;"&gt;&lt;a href="http://en.wikipedia.org/wiki/Image:Photosystems.png" class="image" title="A Photosystem: A light-harvesting cluster of photosynthetic pigments present in the thylakoid membrane of chloroplasts."&gt;&lt;img alt="A Photosystem: A light-harvesting cluster of photosynthetic pigments present in the thylakoid membrane of chloroplasts." src="http://upload.wikimedia.org/wikipedia/commons/thumb/d/da/Photosystems.png/250px-Photosystems.png" class="thumbimage" border="0" height="167" width="250" /&gt;&lt;/a&gt; &lt;div class="thumbcaption"&gt; &lt;div class="magnify" style="float: right;"&gt;&lt;a href="http://en.wikipedia.org/wiki/Image:Photosystems.png" class="internal" title="Enlarge"&gt;&lt;img src="http://en.wikipedia.org/skins-1.5/common/images/magnify-clip.png" alt="" height="11" width="15" /&gt;&lt;/a&gt;&lt;/div&gt; A Photosystem: A &lt;b&gt;light-harvesting&lt;/b&gt; cluster of photosynthetic pigments present in the thylakoid membrane of chloroplasts.&lt;/div&gt; &lt;/div&gt; &lt;/div&gt; &lt;div class="thumb tright"&gt; &lt;div class="thumbinner" style="width: 252px;"&gt;&lt;a href="http://en.wikipedia.org/wiki/Image:Z-scheme.png" class="image" title="The &amp;quot;Z scheme&amp;quot;"&gt;&lt;img alt="The &amp;quot;Z scheme&amp;quot;" src="http://upload.wikimedia.org/wikipedia/en/thumb/c/c7/Z-scheme.png/250px-Z-scheme.png" class="thumbimage" border="0" height="78" width="250" /&gt;&lt;/a&gt; &lt;div class="thumbcaption"&gt; &lt;div class="magnify" style="float: right;"&gt;&lt;a href="http://en.wikipedia.org/wiki/Image:Z-scheme.png" class="internal" title="Enlarge"&gt;&lt;img src="http://en.wikipedia.org/skins-1.5/common/images/magnify-clip.png" alt="" height="11" width="15" /&gt;&lt;/a&gt;&lt;/div&gt; The "Z scheme"&lt;/div&gt; &lt;/div&gt; &lt;/div&gt; &lt;p&gt;In plants, &lt;a href="http://en.wikipedia.org/wiki/Light_dependent_reaction" title="Light dependent reaction"&gt;light dependent reactions&lt;/a&gt; occur in the &lt;a href="http://en.wikipedia.org/wiki/Thylakoid_membrane" title="Thylakoid membrane"&gt;thylakoid membranes&lt;/a&gt; of the &lt;a href="http://en.wikipedia.org/wiki/Chloroplast" title="Chloroplast"&gt;chloroplasts&lt;/a&gt; and use light energy to synthesize ATP and NADPH. The light dependent reaction has two forms; cyclic and non-cyclic reaction. In the non-cyclic reaction, the &lt;a href="http://en.wikipedia.org/wiki/Photon" title="Photon"&gt;photons&lt;/a&gt; are captured in the light-harvesting &lt;a href="http://en.wikipedia.org/wiki/Antenna_complex" title="Antenna complex"&gt;antenna complexes&lt;/a&gt; of &lt;a href="http://en.wikipedia.org/wiki/Photosystem" title="Photosystem"&gt;photosystem II&lt;/a&gt; by &lt;a href="http://en.wikipedia.org/wiki/Chlorophyll" title="Chlorophyll"&gt;chlorophyll&lt;/a&gt; and other &lt;a href="http://en.wikipedia.org/wiki/Accessory_pigments" title="Accessory pigments"&gt;accessory pigments&lt;/a&gt; (see diagram at right). When a chlorophyll molecule at the core of the photosystem II reaction center obtains sufficient excitation energy from the adjacent antenna pigments, an electron is transferred to the primary electron-acceptor molecule, Pheophytin, through a process called &lt;a href="http://en.wikipedia.org/wiki/Photoinduced_charge_separation" title="Photoinduced charge separation"&gt;Photoinduced charge separation&lt;/a&gt;. These electrons are shuttled through an &lt;a href="http://en.wikipedia.org/wiki/Electron_transfer_chain" title="Electron transfer chain"&gt;electron transport chain&lt;/a&gt;, the so called &lt;i&gt;&lt;b&gt;Z-scheme&lt;/b&gt;&lt;/i&gt; shown in the diagram, that initially functions to generate a &lt;a href="http://en.wikipedia.org/wiki/Chemiosmotic_potential" title="Chemiosmotic potential"&gt;chemiosmotic potential&lt;/a&gt; across the membrane. An &lt;a href="http://en.wikipedia.org/wiki/ATP_synthase" title="ATP synthase"&gt;ATP synthase&lt;/a&gt; enzyme uses the chemiosmotic potential to make ATP during photophosphorylation while &lt;a href="http://en.wikipedia.org/wiki/NADPH" title="NADPH"&gt;NADPH&lt;/a&gt; is a product of the terminal &lt;a href="http://en.wikipedia.org/wiki/Redox" title="Redox"&gt;redox&lt;/a&gt; reaction in the &lt;i&gt;Z-scheme&lt;/i&gt;. The electron enters the Photosystem I molecule. The electron is excited due to the light absorbed by the photosystem. A second electron carrier accepts the electron, which again is passed down lowering energies of &lt;a href="http://en.wikipedia.org/wiki/Electron_acceptor" title="Electron acceptor"&gt;electron acceptors&lt;/a&gt;. The energy created by the electron acceptors is used to move hydrogen ions across the thylakoid membrane into the lumen. The electron is used to reduce the co-enzyme NADP, which has functions in the light-independent reaction. The cyclic reaction is similar to that of the non-cyclic, but differs in the form that it only generates ATP and no reduced NADP (NADPH) is created. The cyclic reaction takes place only at photosystem I. Once the electron is displaced from the photosystem, the electron is passed down the electron acceptor molecules and returns back to photosystem I, from where it was emitted; hence the name cyclic reaction.&lt;/p&gt; &lt;p&gt;&lt;a name="Water_photolysis" id="Water_photolysis"&gt;&lt;/a&gt;&lt;/p&gt; &lt;h5&gt;&lt;span class="mw-headline"&gt;Water photolysis&lt;/span&gt;&lt;/h5&gt; &lt;dl&gt;&lt;dd&gt; &lt;div class="noprint relarticle mainarticle"&gt;&lt;i&gt;Main articles: &lt;a href="http://en.wikipedia.org/wiki/Photodissociation" title="Photodissociation"&gt;Photodissociation&lt;/a&gt; and &lt;a href="http://en.wikipedia.org/wiki/Oxygen_evolution" title="Oxygen evolution"&gt;Oxygen evolution&lt;/a&gt;&lt;/i&gt;&lt;/div&gt; &lt;/dd&gt;&lt;/dl&gt; &lt;p&gt;The NADPH is the main &lt;a href="http://en.wikipedia.org/wiki/Reducing_agent" title="Reducing agent"&gt;reducing agent&lt;/a&gt; in chloroplasts, providing a source of energetic electrons to other reactions. Its production leaves chlorophyll with a deficit of electrons (oxidized), which must be obtained from some other reducing agent. The excited electrons lost from chlorophyll in photosystem I are replaced from the electron transport chain by &lt;a href="http://en.wikipedia.org/wiki/Plastocyanin" title="Plastocyanin"&gt;plastocyanin&lt;/a&gt;. However, since photosystem II includes the first steps of the &lt;i&gt;Z-scheme&lt;/i&gt;, an external source of electrons is required to reduce its oxidized &lt;b&gt;chlorophyll &lt;i&gt;a&lt;/i&gt;&lt;/b&gt; molecules. The source of electrons in green-plant and cyanobacterial photosynthesis is water. Two water molecules are oxidized by four successive charge-separation reactions by photosystem II to yield a molecule of diatomic &lt;a href="http://en.wikipedia.org/wiki/Oxygen" title="Oxygen"&gt;oxygen&lt;/a&gt; and four &lt;a href="http://en.wikipedia.org/wiki/Hydrogen" title="Hydrogen"&gt;hydrogen&lt;/a&gt; ions; the electron yielded in each step is transferred to a redox-active &lt;a href="http://en.wikipedia.org/wiki/Tyrosine" title="Tyrosine"&gt;tyrosine&lt;/a&gt; residue that then reduces the photoxidized paired-chlorophyll &lt;i&gt;a&lt;/i&gt; species called P680 that serves as the primary (light-driven) electron donor in the photosystem II reaction center. The oxidation of water is &lt;a href="http://en.wikipedia.org/wiki/Catalysis" title="Catalysis"&gt;catalyzed&lt;/a&gt; in photosystem II by a redox-active structure that contains four &lt;a href="http://en.wikipedia.org/wiki/Manganese" title="Manganese"&gt;manganese&lt;/a&gt; ions; this &lt;a href="http://en.wikipedia.org/wiki/Oxygen_evolution" title="Oxygen evolution"&gt;oxygen-evolving complex&lt;/a&gt; binds two water molecules and stores the four oxidizing equivalents that are required to drive the water-oxidizing reaction. Photosystem II is the only known biological &lt;a href="http://en.wikipedia.org/wiki/Enzyme" title="Enzyme"&gt;enzyme&lt;/a&gt; that carries out this oxidation of water. The hydrogen ions contribute to the transmembrane chemiosmotic potential that leads to ATP synthesis. Oxygen is a waste product of light-independent reactions, but the majority of organisms on Earth use oxygen for &lt;a href="http://en.wikipedia.org/wiki/Cellular_respiration" title="Cellular respiration"&gt;cellular respiration&lt;/a&gt;, including photosynthetic organisms.&lt;/p&gt; &lt;p&gt;&lt;a name="Quantum_mechanical_effects" id="Quantum_mechanical_effects"&gt;&lt;/a&gt;&lt;/p&gt; &lt;h5&gt;&lt;span class="mw-headline"&gt;Quantum mechanical effects&lt;/span&gt;&lt;/h5&gt; &lt;p&gt;Through photosynthesis, sunlight energy is transferred to molecular reaction centers for conversion into chemical energy with nearly 100-percent efficiency. The transfer of the solar energy takes place almost instantaneously, so little energy is wasted as heat. However, only 43% of the total solar incident radiation can be used (only light in the range 400-700 nm), 20% of light is blocked by canopy, and plant respiration requires about 33% of the stored energy, which brings down the actual efficiency of photosynthesis to about 6.6%&lt;sup id="_ref-4" class="reference"&gt;&lt;a href="http://en.wikipedia.org/wiki/Photosynthesis#_note-4" title=""&gt;[8]&lt;/a&gt;&lt;/sup&gt;.&lt;/p&gt; &lt;p&gt;A study led by researchers with the &lt;a href="http://en.wikipedia.org/wiki/U.S._Department_of_Energy" title="U.S. Department of Energy"&gt;U.S. Department of Energy&lt;/a&gt;’s &lt;a href="http://en.wikipedia.org/wiki/Lawrence_Berkeley_National_Laboratory" title="Lawrence Berkeley National Laboratory"&gt;Lawrence Berkeley National Laboratory&lt;/a&gt; (Berkeley Lab) and the &lt;a href="http://en.wikipedia.org/wiki/University_of_California_at_Berkeley" title="University of California at Berkeley"&gt;University of California at Berkeley&lt;/a&gt; suggests that long-lived wavelike electronic &lt;a href="http://en.wikipedia.org/wiki/Quantum_coherence" title="Quantum coherence"&gt;quantum coherence&lt;/a&gt; plays an important part in this instantaneous transfer of energy by allowing the photosynthetic system to simultaneously try each potential energy pathway and choose the most efficient option. Results of the study are presented in the April 12, 2007 issue of the journal &lt;a href="http://en.wikipedia.org/wiki/Nature" title="Nature"&gt;Nature&lt;/a&gt;.&lt;sup id="_ref-5" class="reference"&gt;&lt;a href="http://en.wikipedia.org/wiki/Photosynthesis#_note-5" title=""&gt;[9]&lt;/a&gt;&lt;/sup&gt;&lt;/p&gt; &lt;p&gt;&lt;a name="Oxygen_and_photosynthesis" id="Oxygen_and_photosynthesis"&gt;&lt;/a&gt;&lt;/p&gt; &lt;h5&gt;&lt;span class="mw-headline"&gt;Oxygen and photosynthesis&lt;/span&gt;&lt;/h5&gt; &lt;p&gt;With respect to oxygen and photosynthesis, there are two important concepts.&lt;/p&gt; &lt;ul&gt;&lt;li&gt;Plant and &lt;a href="http://en.wikipedia.org/wiki/Cyanobacteria" title="Cyanobacteria"&gt;cyanobacterial&lt;/a&gt; (blue-green algae) cells &lt;i&gt;also use oxygen&lt;/i&gt; for cellular respiration, although they have a net output of oxygen since much more is produced during photosynthesis.&lt;/li&gt;&lt;li&gt;Oxygen is a &lt;i&gt;product of the light-driven water-oxidation reaction catalyzed by photosystem II&lt;/i&gt;; it is not generated by the fixation of carbon dioxide. Consequently, the source of oxygen during photosynthesis is water, not carbon dioxide.&lt;/li&gt;&lt;/ul&gt; &lt;p&gt;&lt;a name="Bacterial_variation" id="Bacterial_variation"&gt;&lt;/a&gt;&lt;/p&gt; &lt;h5&gt;&lt;span class="mw-headline"&gt;Bacterial variation&lt;/span&gt;&lt;/h5&gt; &lt;p&gt;The concept that oxygen production is not directly associated with the fixation of carbon dioxide was first proposed by &lt;a href="http://en.wikipedia.org/wiki/Cornelis_Van_Niel" title="Cornelis Van Niel"&gt;Cornelis Van Niel&lt;/a&gt; in the &lt;a href="http://en.wikipedia.org/wiki/1930s" title="1930s"&gt;1930s&lt;/a&gt;, who studied photosynthetic bacteria. Aside from the &lt;a href="http://en.wikipedia.org/wiki/Cyanobacteria" title="Cyanobacteria"&gt;cyanobacteria&lt;/a&gt;, bacteria only have one photosystem and use reducing agents other than water. They get electrons from a variety of different inorganic chemicals including &lt;a href="http://en.wikipedia.org/wiki/Sulfide" title="Sulfide"&gt;sulfide&lt;/a&gt; or &lt;a href="http://en.wikipedia.org/wiki/Hydrogen" title="Hydrogen"&gt;hydrogen&lt;/a&gt;, so for most of these bacteria oxygen is not produced.&lt;/p&gt; &lt;p&gt;Others, such as the &lt;a href="http://en.wikipedia.org/wiki/Halophile" title="Halophile"&gt;halophiles&lt;/a&gt; (an &lt;a href="http://en.wikipedia.org/wiki/Archaea" title="Archaea"&gt;Archaea&lt;/a&gt;) produced so called purple membranes where the &lt;a href="http://en.wikipedia.org/wiki/Bacteriorhodopsin" title="Bacteriorhodopsin"&gt;bacteriorhodopsin&lt;/a&gt; could harvest light and produce energy. The purple membranes was one of the first to be used to demonstrate the &lt;a href="http://en.wikipedia.org/wiki/Chemiosmosis" title="Chemiosmosis"&gt;chemiosmotic&lt;/a&gt; theory: light hit the membranes and the pH of the solution that contained the purple membranes dropped as protons were pumping out of the membrane.&lt;/p&gt;&lt;div class="blogger-post-footer"&gt;&lt;img width='1' height='1' src='https://blogger.googleusercontent.com/tracker/1112086065409433705-5312255161117983186?l=janakihasin.blogspot.com' alt='' /&gt;&lt;/div&gt;</content><link rel='replies' type='application/atom+xml' href='http://janakihasin.blogspot.com/feeds/5312255161117983186/comments/default' title='Post Comments'/><link rel='replies' type='text/html' href='http://www.blogger.com/comment.g?blogID=1112086065409433705&amp;postID=5312255161117983186' title='0 Comments'/><link rel='edit' type='application/atom+xml' href='http://www.blogger.com/feeds/1112086065409433705/posts/default/5312255161117983186'/><link rel='self' type='application/atom+xml' href='http://www.blogger.com/feeds/1112086065409433705/posts/default/5312255161117983186'/><link rel='alternate' type='text/html' href='http://janakihasin.blogspot.com/2007/12/molecular-production-light-dependent.html' title=''/><author><name>janakihasin</name><uri>http://www.blogger.com/profile/18031418144832292899</uri><email>noreply@blogger.com</email><gd:image rel='http://schemas.google.com/g/2005#thumbnail' width='16' height='16' src='http://img2.blogblog.com/img/b16-rounded.gif'/></author><thr:total>0</thr:total></entry></feed>
